Home → Our Services → Software → Motif Searches - Protein

• antigenic - Find antigenic sites in proteins (part of the EMBOSS package)
• digest - Find the positions where a specified proteolytic enzyme or reagent might cut a sequence (part of the EMBOSS package)
• epestfind - Find PEST motifs as potential proteolytic cleavage sties (part of the EMBOSS package)
• fuzzpro - Search a protein sequence using PROSITE style patterns (part of the EMBOSS package)
• helixturnhelix - Find helix-turn-helix nucleic acid binding motifs in a protein (part of the EMBOSS package)
• InterProScan - a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences
• meme - Detect motifs (part of the EMBOSS package)
• oddcomp - Find protein sequence regions with a biased composition (part of the EMBOSS package)
• patmatdb - Search a protein sequence with a motif (part of the EMBOSS package)
• patmatmotifs - Search a PROSITE motif database with a protein sequence (part of the EMBOSS package)
• pepcoil - Predict coiled coil regions (part of the EMBOSS package)
• preg - Search a protein sequence using regular expressions (part of the EMBOSS package)
• ProSearch - Search PROSITE patterns in a sequence
• ps_scan - Scan proteins against patterns, profiles and rules of PROSITE
• pscan - Scan proteins using PRINTS (part of the EMBOSS package)
• sigcleave - Predict protein signal cleavage sites (part of the EMBOSS package)